GgaEX0019783 @ galGal3
Exon Skipping
Gene
ENSGALG00000013124 | FHOD3
Description
NA
Coordinates
chr2:85359668-85404579:+
Coord C1 exon
chr2:85359668-85359689
Coord A exon
chr2:85390429-85390535
Coord C2 exon
chr2:85404515-85404579
Length
107 bp
Sequences
Splice sites
3' ss Seq
ATCTGAAATTTGTTTTACAGCTT
3' ss Score
8.1
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
CCTGCTCCGCGCCCCGCAGAAG
Seq A exon
CTTGATGACTGCACTCTGCAATTGTCTCACAATGGTACCTATCTGGACTTAGAATCTACTCTAGCAGAACAAAGAGATGAATTGGAGGGCTTCCAGGAAGATGCTGG
Seq C2 exon
GAGGGGCAAGAAGCACAGTATAATTTTGAGGACCCAGCTGTCAGTGAGAGTCCATGCCTGTATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013124-'0-1,'0-0,2-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]