RnoEX0036003 @ rn6
Exon Skipping
Gene
ENSRNOG00000027230 | Fhod3
Description
formin homology 2 domain containing 3 [Source:RGD Symbol;Acc:2322319]
Coordinates
chr18:16650806-16712571:+
Coord C1 exon
chr18:16650806-16651137
Coord A exon
chr18:16695398-16695504
Coord C2 exon
chr18:16712507-16712571
Length
107 bp
Sequences
Splice sites
3' ss Seq
ACTCCTCCTTTCTCTCCCAGCTC
3' ss Score
10.26
5' ss Seq
AGGGTAAGC
5' ss Score
9.04
Exon sequences
Seq C1 exon
CCGTGGCCGGAGTCCTGGCTGCAGCCGGGCGCGCTGTAGCCTGCTAGCCCGCGAGCCTGTTAGCGGCGGCGGCGGCGGCGGCGGCAGCTTCTCCGCACACACCCGGCGCCCCCGCCTGCGCGGCCCGCTGACCCCGGGGCCCGTGCCCCACGGGGCAGGGATGCATCATGGCCACGCTGGCTTGTCGCGTGCAGTTCTTGGACGACACCGATCCTTTCAACAGCACCAACTTCCCAGAGCCCAGCCGGCCACCGCTGTTCACATTCCGCGAGGACCTGGCTCTGGGCACCCAGTTGGCCGGGGTCCATCGGCTGCTGAGGGCGCCACACAAG
Seq A exon
CTCGATGACTGTACCCTGCAGCTGTCCCACAATGGTGCCTACCTCGATCTGGAGGCCACGCTGGCGGAACAGCGGGATGAGCTGGAAGGCTTCCAGGATGACACAGG
Seq C2 exon
GCGGGGCAAGAAGAACAGCATTATCCTGAGGACACAGCTGTCTGTGAGGGTCCATGCTTGCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027230-'0-1,'0-0,7-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.178 A=0.167 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF063718=Drf_GBD=PU(8.6=33.3)
C2:
PF063718=Drf_GBD=FE(15.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGGATGCATCATGGCCAC
R:
CAATGCAAGCATGGACCCTCA
Band lengths:
242-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]