BtaEX6091518 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021581 | FHOD3
Description
formin homology 2 domain containing 3 [Source:HGNC Symbol;Acc:HGNC:26178]
Coordinates
chr24:21095813-21172169:-
Coord C1 exon
chr24:21171862-21172169
Coord A exon
chr24:21110159-21110265
Coord C2 exon
chr24:21095813-21095877
Length
107 bp
Sequences
Splice sites
3' ss Seq
ACAAGCTCTTTCTCTTGCAGCTG
3' ss Score
10.99
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
CCCCGCGGCCGGAGCCCGGGCTGCAGCCAGGCGCGCCGGAGCCTGCGAGCCCGCGAGCCAGCGAGCGGCGGCCGCGGCCTCCCCTGCTTGCGGTGACCCCCGTCGATCCCGGGGCCCGCGCCCCCCTGGGGCAGGGATGCATCATGGCCACTCTGGCCTGCCGGGTGCAGTTCTTGGACGATACGGACCCTTTCAACAGCACCAACTTCCCCGAGCCCAGCCGGCCGCCGCTGTTCACGTTCCGCGAGGACCTCGCGCTCGGCACCCAGCTGGCCGGGGTCCACCGACTGCTGCGGGCGCCGCACAAG
Seq A exon
CTGGACGACTGCACCCTGCAGCTCTCCCACAATGGTACTTACCTGGACTTGGAGGCCACCCTGGCCGAGCAACGGGACGAGTTAGAAGGCTTCCAGGATGACGCTGG
Seq C2 exon
GCGGGGCAAGAAGCACAGCATCATCCTAAGGACACAGCTGTCTGTGAGGGTCCATGCCTGCATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021581-'0-1,'0-0,3-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.182 A=0.083 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF063718=Drf_GBD=PU(10.9=56.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGGCAGGGATGCATCAT
R:
CAGGCATGGACCCTCACAGA
Band lengths:
243-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]