DreEX0032796 @ danRer10
Exon Skipping
Gene
ENSDARG00000063682 | fhod3a
Description
formin homology 2 domain containing 3a [Source:ZFIN;Acc:ZDB-GENE-060503-633]
Coordinates
chr19:712318-723358:+
Coord C1 exon
chr19:712318-712482
Coord A exon
chr19:718947-719059
Coord C2 exon
chr19:723310-723358
Length
113 bp
Sequences
Splice sites
3' ss Seq
GTGTGTGTGTGTGTGTGCAGCTC
3' ss Score
9.3
5' ss Seq
AGGGTCAGT
5' ss Score
5.85
Exon sequences
Seq C1 exon
ATGTCTTCGTTCGTGTGTCGGGTTCAGTTTTTAGACGATACCGATCCGTTCAACAGTACTAATTTCCCCGAACCTACCAGACCTCCGGTGTACACTTTCCGGGAAGATATTCCGGTGATCAACCAGATCGCGGGAGTGCACCGGCTCCTCAAGGCTCCCCACAAG
Seq A exon
CTCGATGACTGCGCTCTCCAGCTCTCTCACAATGGGGTTTATCTGGATCTGGAGTCCACACTGGACGAGCAGAGAGACGAACTGGAGGGATTCCAGCAGGACGACTGCGCAGG
Seq C2 exon
GAGGGGAAAGAAGCACAGTGTGATTTTACGAACTCAGCTGAGCGTCCGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063682_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.190 A=0.074 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF063718=Drf_GBD=PU(3.9=13.2)
C2:
PF063718=Drf_GBD=PU(13.1=69.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTCTTCGTTCGTGTGTCGG
R:
GACGCTCAGCTGAGTTCGTAA
Band lengths:
211-324
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]