MmuEX6000926 @ mm9
Exon Skipping
Gene
ENSMUSG00000044201 | Cdc25c
Description
cell division cycle 25 homolog C (S. pombe) [Source:MGI Symbol;Acc:MGI:88350]
Coordinates
chr18:34893231-34895123:-
Coord C1 exon
chr18:34895025-34895123
Coord A exon
chr18:34894373-34894506
Coord C2 exon
chr18:34893231-34893342
Length
134 bp
Sequences
Splice sites
3' ss Seq
GCTAACATTCTTCTCTGCAGGGA
3' ss Score
8.1
5' ss Seq
AATGTGAGT
5' ss Score
7.8
Exon sequences
Seq C1 exon
GTGGCTGCTTTGCTGTCTGGAAAGTTCCAGAGTGTGATCGAGAGGTTTTATATCATTGATTGCCGCTATCCGTATGAGTACCTGGGAGGCCACATCCTG
Seq A exon
GGAGCCTTAAACCTGCACAGTCAGAAGGAACTGCATGAGTTCTTTCTGAGGAAGCCTGTTGTTCCTCTGGATATCCAGAAAAGAGTCATCATTGTGTTCCTCTGTGAATTCTCCTCCGAGAGAGGCCCTCGAAT
Seq C2 exon
GTGCCGTTCTCTGAGAGAAAAAGACAGGGCTCTGAACCAGTATCCGGCATTATATTACCCTGAGCTATATATCCTCAAAGGGGGCTACAGAGATTTCTTTCCAGAGTATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044201-'18-20,'18-19,19-20=AN
Average complexity
A_S
Mappability confidence:
86%=75=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0058115=Rhodanese=PU(25.0=81.8)
A:
PF0058115=Rhodanese=FE(40.7=100)
C2:
PF0058115=Rhodanese=PD(32.4=92.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGCTTTGCTGTCTGGAAA
R:
TCTGGAAAGAAATCTCTGTAGCCC
Band lengths:
202-336
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: