RnoEX0018923 @ rn6
Exon Skipping
Gene
ENSRNOG00000024008 | Cdc25c
Description
cell division cycle 25C [Source:RGD Symbol;Acc:1311875]
Coordinates
chr18:27530409-27532033:-
Coord C1 exon
chr18:27531935-27532033
Coord A exon
chr18:27531160-27531293
Coord C2 exon
chr18:27530409-27530520
Length
134 bp
Sequences
Splice sites
3' ss Seq
GCTAACATTCTTTTCTGCAGGGA
3' ss Score
7.81
5' ss Seq
AATGTGAGT
5' ss Score
7.8
Exon sequences
Seq C1 exon
GTGGCTGCATTGCTGTCTGGGAAGTTCCAGAGTGTGATCGAGAGGTTTTATATCATTGATTGCCGTTATCCGTATGAGTACCTGGGAGGACACATTCTG
Seq A exon
GGAGCCTTAAACCTGTACAGTCAGAAGGAACTATACGAGTTCTTTCTGAAGAAGCCTGTTGTCCCTGAGGACACCCAGAAGAGAGTCATCATTGTGTTCCTCTGTGAATTCTCCTCAGAGAGAGGCCCACGAAT
Seq C2 exon
GTGCCGTTCTCTGAGAGAAAAAGACAGGGCTCTGAACCAGTATCCAGCATTATACTACCCTGAGCTGTATATCCTCAGAGGGGGCTACAGAGATTTCTTTCCAGAATATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024008-'15-19,'15-18,16-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0058115=Rhodanese=PU(25.0=81.8)
A:
PF0058115=Rhodanese=FE(40.7=100)
C2:
PF0058115=Rhodanese=PD(32.4=92.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTGCATTGCTGTCTGG
R:
CTGGAAAGAAATCTCTGTAGCCCC
Band lengths:
202-336
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]