HsaEX6100083 @ hg38
Exon Skipping
Gene
ENSG00000158402 | CDC25C
Description
cell division cycle 25C [Source:HGNC Symbol;Acc:HGNC:1727]
Coordinates
chr5:138285265-138287267:-
Coord C1 exon
chr5:138287169-138287267
Coord A exon
chr5:138286497-138286630
Coord C2 exon
chr5:138285265-138285841
Length
134 bp
Sequences
Splice sites
3' ss Seq
CTAAAATTCTTCTTCTACAGGGA
3' ss Score
8.12
5' ss Seq
AATGTGAGT
5' ss Score
7.8
Exon sequences
Seq C1 exon
GTGGCTGCCTTACTGTCGGGGAAGTTCCAGGGTCTGATTGAGAAGTTTTATGTCATTGATTGTCGCTATCCATATGAGTATCTGGGAGGACACATCCAG
Seq A exon
GGAGCCTTAAACTTATATAGTCAGGAAGAACTGTTTAACTTCTTTCTGAAGAAGCCCATCGTCCCTTTGGACACCCAGAAGAGAATAATCATCGTGTTCCACTGTGAATTCTCCTCAGAGAGGGGCCCCCGAAT
Seq C2 exon
GAACTGTGTGAACCACAGAGCTACTGCCCTATGCATCATCAGGACCACAAGACTGAGTTGCTGAGGTGTCGAAGCCAGAGCAAAGTGCAGGAAGGGGAGCGGCAGCTGCGGGAGCAGATTGCCCTTCTGGTGAAGGACATGAGCCCATGATAACATTCCAGCCACTGGCTGCTAACAAGTCACCAAAAGACACTGCAGAAACCCTGAGCAGAAAGAGGCCTTCTGGATGGCCAAACCCAAGATTATTAAAAGATGTCTCTGCAAACCAACAGGCTACCAACTTGTATCCAGGCCTGGGAATGGATTAGGTTTCAGCAGAGCTGAAAGCTGGTGGCAGAGTCCTGGAGCTGGCTCTATAAGGCAGCCTTGAGTTGCATAGAGATTTGTATTGGTTCAGGGAACTCTGGCATTCCTTTTCCCAACTCCTCATGTCTTCTCACAAGCCAGCCAACTCTTTCTCTCTGGGCTTCGGGCTATGCAAGAGCGTTGTCTACCTTCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000158402_MULTIEX1-4/5=3-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0058115=Rhodanese=PU(25.0=81.8)
A:
PF0058115=Rhodanese=FE(40.7=100)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTACTGTCGGGGAAGTTC
R:
CATGGGCTCATGTCCTTCACC
Band lengths:
242-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains