MmuEX6002393 @ mm9
Exon Skipping
Gene
ENSMUSG00000025885 | Myo5b
Description
myosin VB [Source:MGI Symbol;Acc:MGI:106598]
Coordinates
chr18:74837075-74855137:+
Coord C1 exon
chr18:74837075-74837172
Coord A exon
chr18:74842203-74842289
Coord C2 exon
chr18:74855026-74855137
Length
87 bp
Sequences
Splice sites
3' ss Seq
ATTTTTTTTTAACTTGGCAGCTT
3' ss Score
6.69
5' ss Seq
CAGGTAACG
5' ss Score
10.52
Exon sequences
Seq C1 exon
TTTCGTACTTCCCTAAACCTGCTTATGGAGACCCTGAATGCCACAACGCCACACTATGTCCGGTGCATCAAGCCCAACGATGAAAAGCTTCCCTTCCA
Seq A exon
CTTTGACCCCAAGAGAGCTGTACAGCAACTCCGAGCCTGCGGTGTGCTGGAGACCATTCGGATCAGCGCGGCAGGCTACCCATCCAG
Seq C2 exon
GTGGACCTACCATGACTTCTTCAACCGGTATCGGGTGTTGATGAAGAAGAGAGAGCTCACCAACACCGACAAGAAGAATATCTGCAAGTCTGTCCTGGAGAGTCTCATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025885-'24-22,'24-21,25-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.7=100)
A:
PF0006316=Myosin_head=FE(4.3=100)
C2:
PF0006316=Myosin_head=FE(5.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGACCCTGAATGCCACAAC
R:
ACTCTCCAGGACAGACTTGCA
Band lengths:
175-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: