RnoEX0057408 @ rn6
Exon Skipping
Gene
ENSRNOG00000014104 | Myo5b
Description
myosin Vb [Source:RGD Symbol;Acc:621347]
Coordinates
chr18:70648302-70665824:+
Coord C1 exon
chr18:70648302-70648399
Coord A exon
chr18:70653198-70653284
Coord C2 exon
chr18:70665710-70665824
Length
87 bp
Sequences
Splice sites
3' ss Seq
TGCTGTTTTTCACTTTGCAGCTT
3' ss Score
9.96
5' ss Seq
CAGGTAACG
5' ss Score
10.52
Exon sequences
Seq C1 exon
TTCCGCACTTCCCTAAACCTGCTTATGGAGACTCTGAATGCCACAACGCCACACTACGTTCGATGCATCAAGCCCAACGACGAAAAGCTCCCCTTCCA
Seq A exon
CTTCGACCCAAAGAGAGCTGTGCAGCAGCTCAGAGCCTGCGGCGTGTTGGAGACCATTCGGATCAGCGCGGCAGGCTACCCGTCCAG
Seq C2 exon
GTGGACCTACCATGACTTCTTCAACCGGTATCGGGTGTTGATGAAGAAGAGAGAGCTTGCCAACACCACCGACAAGAAGAATATCTGCAAGTCTGTCCTGGAGAGTCTCATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014104-'29-23,'29-22,30-23
Average complexity
S
Mappability confidence:
88%=100=75%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.7=100)
A:
PF0006316=Myosin_head=FE(4.3=100)
C2:
PF0006316=Myosin_head=FE(5.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACTCTGAATGCCACAACGC
R:
ACTCTCCAGGACAGACTTGCA
Band lengths:
176-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]