GgaEX6007787 @ galGal3
Exon Skipping
Gene
ENSGALG00000004624 | MYO5A_CHICK
Description
NA
Coordinates
chr10:10045470-10046507:+
Coord C1 exon
chr10:10045470-10045567
Coord A exon
chr10:10046213-10046299
Coord C2 exon
chr10:10046399-10046507
Length
87 bp
Sequences
Splice sites
3' ss Seq
TTCTTTTTATTCCTACATAGATT
3' ss Score
8.72
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
TTTCGAAACTCTCTTCATCTGCTGATGGAAACCCTGAACGCCACAACTCCACACTATGTGCGCTGTATTAAGCCTAACGACTTCAAGTTTCCATTCAC
Seq A exon
ATTTGACGAAAAGCGAGCAGTGCAGCAGCTGAGAGCTTGTGGTGTCCTGGAGACCATCCGAATCAGTGCAGCTGGTTTCCCCTCCAG
Seq C2 exon
GTGGACATACCAAGAGTTCTTCAGCCGTTACCGTGTTCTCATGAAGCAGAAAGATGTCCTTAGTGACCGAAAACAGACATGTAAAAATGTCCTGGAGAAGCTGATTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004624-'23-27,'23-26,24-27=AN
Average complexity
A_S
Mappability confidence:
88%=75=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.7=100)
A:
PF0006316=Myosin_head=FE(4.3=100)
C2:
PF0006316=Myosin_head=FE(5.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACCCTGAACGCCACAACTC
R:
CAGAATCAGCTTCTCCAGGACA
Band lengths:
179-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]