DreEX6066379 @ danRer10
Exon Skipping
Gene
ENSDARG00000061635 | myo5aa
Description
myosin VAa [Source:ZFIN;Acc:ZDB-GENE-041027-2]
Coordinates
chr18:39008649-39010771:+
Coord C1 exon
chr18:39008649-39008746
Coord A exon
chr18:39010491-39010577
Coord C2 exon
chr18:39010663-39010771
Length
87 bp
Sequences
Splice sites
3' ss Seq
AAATATTTTGCTATTACCAGGTT
3' ss Score
5.62
5' ss Seq
GAGGTACAC
5' ss Score
5.99
Exon sequences
Seq C1 exon
TTCCGGAACTCTCTGCAGCTGCTGATGGAGACACTGAATGCCACTACACCTCATTATGTTCGATGCATTAAACCCAACGATTACAAACATGCCTTCAC
Seq A exon
GTTTGACCCCAAGAGGGCAGTGCAGCAACTGCGTGCTTGTGGAGTTTTGGAAACAATCCGCATCTCTGCAGCTGGTTTCCCATCGAG
Seq C2 exon
GTGGACGTATCAAGAGTTCTTTAGCAGGTATCGTGTACTGATGAAACAAAAAGATGTTCTGACGGACAAGAAGATGACCTGTAAGAATGTTCTGGAGAAACTGGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061635-'21-21,'21-20,22-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.7=100)
A:
PF0006316=Myosin_head=FE(4.3=100)
C2:
PF0006316=Myosin_head=FE(5.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTCTCTGCAGCTGCTGATG
R:
CAGGTCATCTTCTTGTCCGTCA
Band lengths:
173-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]