RnoEX6036543 @ rn6
Exon Skipping
Gene
ENSRNOG00000058866 | Myo5a
Description
myosin VA [Source:RGD Symbol;Acc:3143]
Coordinates
chr8:82083981-82086911:+
Coord C1 exon
chr8:82083981-82084078
Coord A exon
chr8:82086637-82086723
Coord C2 exon
chr8:82086803-82086911
Length
87 bp
Sequences
Splice sites
3' ss Seq
TTTTTTGTTTCTTTATGCAGATT
3' ss Score
10.5
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
TTTCGAAACTCCCTTCACCTGCTTATGGAAACCCTTAACGCCACTACTCCTCACTATGTTCGCTGTATTAAGCCCAATGATTTCAAGTTTCCATTCAC
Seq A exon
ATTTGATGAGAAGAGAGCAGTACAGCAGCTAAGAGCATGTGGTGTCCTGGAGACCATCCGGATCAGCGCAGCAGGGTTTCCCTCAAG
Seq C2 exon
GTGGACTTATCAAGAGTTTTTCAGCCGGTACCGGGTCCTAATGAAGCAAAAGGATGTGCTGGGAGATAGAAAGCAAACATGCCAGAATGTATTAGAGAAACTGATACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058866-'23-28,'23-27,24-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.7=100)
A:
PF0006316=Myosin_head=FE(4.3=100)
C2:
PF0006316=Myosin_head=FE(5.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGAAACTCCCTTCACCTGCT
R:
TGCTTTCTATCTCCCAGCACA
Band lengths:
171-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]