MmuEX6067255 @ mm9
Exon Skipping
Gene
ENSMUSG00000034593 | Myo5a
Description
myosin VA [Source:MGI Symbol;Acc:MGI:105976]
Coordinates
chr9:75009239-75012211:+
Coord C1 exon
chr9:75009239-75009336
Coord A exon
chr9:75011937-75012023
Coord C2 exon
chr9:75012103-75012211
Length
87 bp
Sequences
Splice sites
3' ss Seq
GTTTTTGTTTCTTCATGCAGATT
3' ss Score
10.02
5' ss Seq
ACGGTGAGC
5' ss Score
9.44
Exon sequences
Seq C1 exon
TTTCGAAACTCCCTTCACCTGCTTATGGAAACCCTTAATGCCACTACTCCTCACTATGTACGCTGTATTAAGCCTAATGATTTCAAGTTTCCATTCAC
Seq A exon
ATTTGATGAGAAGAGGGCAGTGCAGCAGCTAAGAGCATGTGGTGTCCTGGAGACCATCCGGATCAGCGCAGCAGGGTTTCCCTCACG
Seq C2 exon
GTGGACTTACCAAGAGTTTTTCAGCCGGTACCGGGTCCTAATGAAGCAAAAAGATGTGCTGGGAGATAGAAAGCAAACGTGCAAGAATGTATTAGAGAAACTAATATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034593-'18-19,'18-18,19-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.7=100)
A:
PF0006316=Myosin_head=FE(4.3=100)
C2:
PF0006316=Myosin_head=FE(5.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGAAACTCCCTTCACCTGCT
R:
TGCTTTCTATCTCCCAGCACA
Band lengths:
171-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: