GgaEX6007787 @ galGal4
Exon Skipping
Gene
ENSGALG00000004624 | MYO5A
Description
unconventional myosin-Va [Source:RefSeq peptide;Acc:NP_990631]
Coordinates
chr10:8299329-8300366:+
Coord C1 exon
chr10:8299329-8299426
Coord A exon
chr10:8300072-8300158
Coord C2 exon
chr10:8300258-8300366
Length
87 bp
Sequences
Splice sites
3' ss Seq
TTCTTTTTATTCCTACATAGATT
3' ss Score
8.72
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
TTTCGAAACTCTCTTCATCTGCTGATGGAAACCCTGAACGCCACAACTCCACACTATGTGCGCTGTATTAAGCCTAACGACTTCAAGTTTCCATTCAC
Seq A exon
ATTTGACGAAAAGCGAGCAGTGCAGCAGCTGAGAGCTTGTGGTGTCCTGGAGACCATCCGAATCAGTGCAGCTGGTTTCCCCTCCAG
Seq C2 exon
GTGGACGTACCAAGAGTTCTTCAGCCGTTACCGTGTTCTCATGAAGCAGAAAGATGTCCTTAGTGACCGAAAACAGACATGTAAAAATGTCCTGGAGAAGCTGATTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004624-'30-30,'30-29,32-30=AN
Average complexity
A_S
Mappability confidence:
89%=80=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.7=100)
A:
PF0006316=Myosin_head=FE(4.2=100)
C2:
PF0006316=Myosin_head=FE(5.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACCCTGAACGCCACAACTC
R:
CAGAATCAGCTTCTCCAGGACA
Band lengths:
179-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]