BtaEX6053650 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006489 | MYO5A
Description
myosin VA (heavy chain 12, myoxin) [Source:HGNC Symbol;Acc:HGNC:7602]
Coordinates
chr10:58084339-58086725:+
Coord C1 exon
chr10:58084339-58084436
Coord A exon
chr10:58086442-58086528
Coord C2 exon
chr10:58086617-58086725
Length
87 bp
Sequences
Splice sites
3' ss Seq
ATTTCCACCTTTACTCATAGGTT
3' ss Score
8.36
5' ss Seq
TCGGTGGGC
5' ss Score
5.46
Exon sequences
Seq C1 exon
TTCCGAAACTCCCTCCACCTGCTTATGGAGACCCTGAATGCCACTACCCCTCACTATGTGCGCTGTATCAAGCCTAACGACTTCAAGTTCCCATTCAC
Seq A exon
GTTTGATGAGAAGAGGGCAGTGCAGCAGCTGAGAGCATGCGGTGTCCTGGAAACCATTCGGATCAGCGCAGCAGGTTTCCCCTCTCG
Seq C2 exon
GTGGACTTACCAAGAATTTTTCAGCCGCTATCGGGTCCTAATGAAGCAAAAAGATGTGCTAAGTGACAGAAAGCAAACATGCAAGAATGTTTTAGAGAAACTGATAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006489-'19-20,'19-19,22-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.005 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.7=100)
A:
PF0006316=Myosin_head=FE(4.2=100)
C2:
PF0006316=Myosin_head=FE(5.3=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCTCCACCTGCTTATGGA
R:
GCATGTTTGCTTTCTGTCACT
Band lengths:
172-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]