MmuEX6002803 @ mm9
Exon Skipping
Gene
ENSMUSG00000029661 | Col1a2
Description
collagen, type I, alpha 2 [Source:MGI Symbol;Acc:MGI:88468]
Coordinates
chr6:4466900-4468844:+
Coord C1 exon
chr6:4466900-4466953
Coord A exon
chr6:4468474-4468518
Coord C2 exon
chr6:4468791-4468844
Length
45 bp
Sequences
Splice sites
3' ss Seq
TTTTTCTTCTGCATATATAGGGT
3' ss Score
8.11
5' ss Seq
GCAGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
GGACACAGTGGTATGGATGGATTAAAGGGACAGCCTGGTGCACAGGGTGTGAAG
Seq A exon
GGTGAACCCGGTGCCCCTGGAGAGAATGGAACTCCAGGTCAAGCA
Seq C2 exon
GGAGCCCGAGGGCTTCCTGGTGAGAGAGGGCGTGTCGGAGCTCCTGGTCCAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029661-'16-18,'16-17,17-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(23.3=100),PF0139113=Collagen=PU(13.6=61.1)
A:
PF0139113=Collagen=PD(16.4=80.0),PF0139113=Collagen=FE(17.3=100)
C2:
PF0139113=Collagen=FE(21.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACACAGTGGTATGGATGGA
R:
AGCTGGACCAGGAGCTCC
Band lengths:
108-153
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: