GgaEX1016490 @ galGal3
Exon Skipping
Gene
ENSGALG00000009641 | COL1A2
Description
NA
Coordinates
chr2:23540986-23542979:+
Coord C1 exon
chr2:23540986-23541039
Coord A exon
chr2:23542646-23542690
Coord C2 exon
chr2:23542926-23542979
Length
45 bp
Sequences
Splice sites
3' ss Seq
GTGAATTTTTTCTTTCACAGGGA
3' ss Score
9.97
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
GGACACAATGGTCTGGATGGTCAGAAGGGACAACCTGGTACTCCTGGCACCAAG
Seq A exon
GGAGAACCTGGTGCCCCTGGTGAAAATGGTACCCCAGGACAACCT
Seq C2 exon
GGTGCTCGCGGTCTCCCTGGTGAGAGAGGAAGAATAGGTGCCCCTGGACCAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009641-'13-14,'13-13,14-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(27.9=100),PF0139113=Collagen=PU(10.3=44.4)
A:
PF0139113=Collagen=PD(14.8=60.0),PF0139113=Collagen=FE(17.9=100)
C2:
PF0139113=Collagen=FE(21.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACACAATGGTCTGGATGGT
R:
GCACCTATTCTTCCTCTCTCACC
Band lengths:
95-140
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]