GgaEX1016490 @ galGal4
Exon Skipping
Gene
ENSGALG00000009641 | COL1A2
Description
collagen alpha-2(I) chain precursor [Source:RefSeq peptide;Acc:NP_001073182]
Coordinates
chr2:23712064-23714211:+
Coord C1 exon
chr2:23712064-23712117
Coord A exon
chr2:23713724-23713768
Coord C2 exon
chr2:23714167-23714211
Length
45 bp
Sequences
Splice sites
3' ss Seq
GTGAATTTTTTCTTTCACAGGGA
3' ss Score
9.97
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
GGACACAATGGTCTGGATGGTCAGAAGGGACAACCTGGTACTCCTGGCACCAAG
Seq A exon
GGAGAACCTGGTGCCCCTGGTGAAAATGGTACCCCAGGACAACCT
Seq C2 exon
GGTGCTCGTGGGAGTGATGGCAGCGCTGGCCCCACTGGACCTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009641_MULTIEX2-4/39=3-6
Average complexity
C2
Mappability confidence:
94%=100=95%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(27.9=100),PF0139113=Collagen=PU(10.3=44.4)
A:
PF0139113=Collagen=PD(13.2=60.0),PF0139113=Collagen=PU(18.9=93.3)
C2:
PF0139113=Collagen=FE(17.9=100),PF0139113=Collagen=PU(2.4=13.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACACAATGGTCTGGATGGT
R:
CTGCCATCACTCCCACGAG
Band lengths:
77-122
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]