DreEX6074029 @ danRer10
Exon Skipping
Gene
ENSDARG00000020007 | col1a2
Description
collagen, type I, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-030131-8415]
Coordinates
chr19:41400595-41402700:+
Coord C1 exon
chr19:41400595-41400648
Coord A exon
chr19:41402444-41402488
Coord C2 exon
chr19:41402602-41402700
Length
45 bp
Sequences
Splice sites
3' ss Seq
ACATTTGCCTTTTTTAACAGGGT
3' ss Score
10.11
5' ss Seq
AGAGTAAGC
5' ss Score
6.31
Exon sequences
Seq C1 exon
GGTTACAATGGTATTGATGGACGCAAAGGAGAGCCTGGCGCAGCTGGTGCCAAG
Seq A exon
GGTGAAAATGGTGCCGCTGGATCAAATGGAACCCCCGGACAGAGA
Seq C2 exon
GGTGGTCGTGGTCTTCCTGGTGAGAGAGGTCGTGTTGGCCCTGCTGGCCCAGCTGGTGCTCGCGGTGCTGATGGTAACACTGGTCCTGCTGGCCCTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000020007-'17-13,'17-12,18-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
PF0139113=Collagen=PU(17.9=93.3)
C2:
PF0139113=Collagen=FE(41.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGATGGACGCAAAGGAGAGC
R:
CCAGCAGGACCAGTGTTACCA
Band lengths:
133-178
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]