MmuEX6004230 @ mm9
Exon Skipping
Gene
ENSMUSG00000029797 | Sspo
Description
SCO-spondin [Source:MGI Symbol;Acc:MGI:2674311]
Coordinates
chr6:48418456-48420590:+
Coord C1 exon
chr6:48418456-48418519
Coord A exon
chr6:48419156-48419213
Coord C2 exon
chr6:48420426-48420590
Length
58 bp
Sequences
Splice sites
3' ss Seq
CTCTCTCTCTCTCTCTGCAGGGT
3' ss Score
14.75
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
AGTCCATCCCATGACCAGGACCCCAGCCCTCTCCCCGACTCAGCCTGGAAAGTTTCCCAGGGAG
Seq A exon
GGTCTGCCAGACACAGAGCCCCAGCAGCCCAAGCAGGAATCATCCTTGCCTGGTGCAG
Seq C2 exon
CAGGTCTCATCCCTGCTTCTGAGGGTACTCTGCCTGTTTCAGGGCAGCCCATGCAGACACTGTCTGCTACCTCCACCTTCCCTCCTGGTGCCAAGAGCCTACACCCAGGAATGGCAGCTGTGACGGTGCATCCTCCACACTCAGTCACACCAGGAGCTCCTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029797-'47-47,'47-45,49-47=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCCATCCCATGACCAGGAC
R:
AGGTGGAGGTAGCAGACAGTG
Band lengths:
142-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: