BtaEX6029408 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008542 | SSPO
Description
SCO-spondin [Source:HGNC Symbol;Acc:HGNC:21998]
Coordinates
chr4:113459571-113461832:+
Coord C1 exon
chr4:113459571-113459643
Coord A exon
chr4:113460340-113460403
Coord C2 exon
chr4:113461668-113461832
Length
64 bp
Sequences
Splice sites
3' ss Seq
ACCATCTCCTATCTCTGCAGGGT
3' ss Score
11.46
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
AATCGAGTCCACAGCCTGGAGCTCCGCGCCCTCCTCCGCCCAGCCTGGACAGCTGCCCCCTCAGCCCAGCGAG
Seq A exon
GGTCTGGCAGAAGCAGAAGCTGACCACTGGCATCCTGGGCGGGGGTCACCCGTGCCCCCCACAG
Seq C2 exon
GCAAGGGGCCAGCGAGTCTTGGGTCCGAGCCTCACCCAAGTCCTGGGGGATCTGTGCAGACTGTGACCCCCACCTCCCAACCGGAGGCACAGGCCCTGAGACCGGAAATGGCAGCTGTGACGGTGCTCCCCCCACACCCCATGGTGACGCCCGAGGTTCCTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008542-'55-55,'55-54,56-55=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCGAGTCCACAGCCTGG
R:
GTCACAGTCTGCACAGATCCC
Band lengths:
140-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]