HsaEX0061898 @ hg38
Exon Skipping
Gene
ENSG00000197558 | SSPO
Description
SCO-spondin [Source:HGNC Symbol;Acc:HGNC:21998]
Coordinates
chr7:149797272-149800004:+
Coord C1 exon
chr7:149797272-149797344
Coord A exon
chr7:149798068-149798125
Coord C2 exon
chr7:149799834-149800004
Length
58 bp
Sequences
Splice sites
3' ss Seq
TGAGCCCTCTCCCTCTGCAGGGC
3' ss Score
11.22
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
ATTCCATTCCACAGCCAAGACCCTGGCCCTCTCCTCTGCCCAGCCGGGGCAGCTGCTGCACTGGCCCAGGGAG
Seq A exon
GGCCTGGCAGAGACTGAGCACTGGCCCCCTGGGCAGGAATCCCCCACGTCCCCGACAG
Seq C2 exon
AGACAAGGCCCGTGAGTCCTGGCCCAGCCTCCGGGGTGCCTCACCATGGGGAATCTGTGCAGATGGTGACCACCACCCCCATACCCCAGATGGAGGCCAGGACCCTGCCACCAGGTATGGCAGCTGTGACGGTGGTGCCCCCACACCCTGTGACTCCAGCGACCCCTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197558_CASSETTE5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTCCACAGCCAAGACCCTG
R:
CACCATCTGCACAGATTCCCC
Band lengths:
137-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development