MmuEX6005986 @ mm9
Exon Skipping
Gene
ENSMUSG00000030102 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor 1 [Source:MGI Symbol;Acc:MGI:96623]
Coordinates
chr6:108467520-108469444:+
Coord C1 exon
chr6:108467520-108467612
Coord A exon
chr6:108468684-108468823
Coord C2 exon
chr6:108469279-108469444
Length
140 bp
Sequences
Splice sites
3' ss Seq
GTTACTTGCCCTGCTCACAGAGC
3' ss Score
7.15
5' ss Seq
GAGGTAAAC
5' ss Score
7.2
Exon sequences
Seq C1 exon
AAACTGGCGAGAGTTTGGCCAACGATTTCCTGTACTCTGATGTGTGCAGGGTAGAGACGGGGGAGAACTGCACCTCTCCTGCACCCAAAGAAG
Seq A exon
AGCTGCTCCCTGCCGAAGAAACGGAACAGGATAAGGAACACACGTGTGAGACCCTGCTCATGTGCATCGTCACTGTTCTGAGTCACGGGCTGCGGAGTGGGGGAGGGGTAGGAGACGTGCTCAGGAAGCCATCCAAAGAG
Seq C2 exon
GAGCCTCTGTTTGCTGCAAGGGTGATCTACGACCTCCTCTTCTTCTTCATGGTCATCATCATCGTCCTGAACCTGATTTTCGGGGTCATCATTGACACCTTTGCTGACCTGAGGAGTGAGAAGCAAAAGAAGGAGGAGATCTTAAAAACCACGTGCTTCATCTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030102-'70-70,'70-69,72-70=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.156 A=0.170 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(12.1=100)
A:
PF0052026=Ion_trans=FE(17.9=100)
C2:
PF0052026=Ion_trans=PD(11.3=51.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGAGAGTTTGGCCAACGATT
R:
GCAGATGAAGCACGTGGTTTT
Band lengths:
252-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: