RnoEX0045407 @ rn6
Exon Skipping
Gene
ENSRNOG00000007104 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor, type 1 [Source:RGD Symbol;Acc:2933]
Coordinates
chr4:140548152-140550016:+
Coord C1 exon
chr4:140548152-140548244
Coord A exon
chr4:140549380-140549519
Coord C2 exon
chr4:140549851-140550016
Length
140 bp
Sequences
Splice sites
3' ss Seq
ATTGCTCACCCTGCTCACAGAGC
3' ss Score
8.62
5' ss Seq
GAGGTAAAG
5' ss Score
8.27
Exon sequences
Seq C1 exon
AAACTGGTGAGAGTTTGGCCAACGATTTCCTGTACTCTGATGTGTGCCGGGTAGAGACGGGGGAGAACTGCACCTCTCCGGCACCCAAAGAAG
Seq A exon
AGCTGCTCCCTGTGGAAGAAACGGAACAGGATAAGGAGCACACGTGTGAGACACTGCTCATGTGCATCGTCACCGTTCTGAGTCACGGGCTGCGGAGTGGGGGCGGAGTAGGAGATGTGCTCAGGAAGCCATCCAAAGAG
Seq C2 exon
GAGCCTCTGTTTGCTGCAAGGGTGATCTATGACCTCCTCTTCTTCTTCATGGTCATCATCATTGTCCTGAACCTCATTTTTGGGGTCATCATCGACACCTTTGCTGACCTGAGGAGTGAGAAGCAGAAGAAGGAAGAGATCTTAAAAACCACGTGCTTCATTTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007104-'93-99,'93-97,96-99
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=0.170 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(12.1=100)
A:
PF0052026=Ion_trans=FE(17.9=100)
C2:
PF0052026=Ion_trans=PD(11.3=51.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGAGAGTTTGGCCAACGAT
R:
CACAAATGAAGCACGTGGTTT
Band lengths:
254-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]