BtaEX6093971 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020455 | ITPR1
Description
Bos taurus inositol 1,4,5-trisphosphate receptor, type 1 (ITPR1), mRNA. [Source:RefSeq mRNA;Acc:NM_174841]
Coordinates
chr22:21648120-21650215:-
Coord C1 exon
chr22:21650123-21650215
Coord A exon
chr22:21648884-21649023
Coord C2 exon
chr22:21648120-21648285
Length
140 bp
Sequences
Splice sites
3' ss Seq
CTGACTTGCCATGTTCGCAGAGC
3' ss Score
7.79
5' ss Seq
GAGGTAGCT
5' ss Score
5.82
Exon sequences
Seq C1 exon
AAGCCAGCGAGAGTTTGGCAAGTGAGTTCCTGTACTCTGACGTGTGTAGGGTGGAGACTGGGGAGAACTGCTCCTCTCCGGCACCCAAAGAAG
Seq A exon
AGCTGGTCCCTGCAGAAGAGACAGAGCAAGATAAAGAGCACACGTGCGAGACGCTGCTGATGTGCATCGTCACGGTGCTGAGTCACGGGCTGCGGAGCGGGGGCGGAGTGGGCGATGTGCTCAGGAAGCCATCCAAAGAG
Seq C2 exon
GAGCCCCTCTTTGCTGCTCGAGTGATCTATGACCTCTTGTTCTTCTTCATGGTCATCATCATTGTCCTTAATCTGATTTTTGGGGTCATCATTGACACCTTTGCCGACCTGAGGAGTGAAAAACAGAAAAAAGAGGAGATATTAAAGACCACGTGCTTTATCTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020455-'69-70,'69-69,70-70=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.156 A=0.170 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(12.1=100)
A:
PF0052026=Ion_trans=FE(17.9=100)
C2:
PF0052026=Ion_trans=PD(11.3=51.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGAGAGTTTGGCAAGTGAG
R:
CGCAGATAAAGCACGTGGTCT
Band lengths:
254-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]