GgaEX0027291 @ galGal3
Exon Skipping
Gene
ENSGALG00000008294 | Q9DEX2_CHICK
Description
NA
Coordinates
chr12:19160795-19165072:+
Coord C1 exon
chr12:19160795-19160896
Coord A exon
chr12:19162526-19162665
Coord C2 exon
chr12:19164912-19165072
Length
140 bp
Sequences
Splice sites
3' ss Seq
TTTGCTTGCTGTGTTAACAGAAC
3' ss Score
7.26
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
Exon sequences
Seq C1 exon
ATCGCACAGAACCAGGTGAAACCATGACTGGGGAGTTTCTCTATTCAGATGTGTGCAAAGCAGGCAGCAGTGAGAACTGTTCTTCAATCATTCCTTCAGATC
Seq A exon
AACTGATTGCTGAAGAAATGGAGGAAGAGAATAAAGAGCATACGTGTGAGACGTTACTGATGTGCATTGTTACTGTACTGAGTCATGGGCTCAGGAGTGGGGGTGGAGTAGGTGATGTGCTCAGGAAACCATCCAAAGAG
Seq C2 exon
GTTTGGAAAGAGATAAGTTTGATAACAAGACAGTCACCTTTGAAGAGCACATTAAAGAAGAGCACAACATGTGGCATTATTTGTGCTTTATCGTGTTAGTGAAAGTAAAAGATTCAACAGAATATACAGGACCAGAAAGTTACGTGGCAGAAATGATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008294_MULTIEX2-1/4=C1-3
Average complexity
C2*
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.057 A=0.021 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(13.1=100)
A:
PF0052026=Ion_trans=FE(17.8=100)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACAGAACCAGGTGAAACCA
R:
TGCCACGTAACTTTCTGGTCC
Band lengths:
248-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]