MmuEX6005998 @ mm9
Exon Skipping
Gene
ENSMUSG00000030102 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor 1 [Source:MGI Symbol;Acc:MGI:96623]
Coordinates
chr6:108421017-108431417:+
Coord C1 exon
chr6:108421017-108421197
Coord A exon
chr6:108423401-108423654
Coord C2 exon
chr6:108431217-108431417
Length
254 bp
Sequences
Splice sites
3' ss Seq
ATCACAAGTTTGCCTTTTAGCCA
3' ss Score
3.71
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
CACTCGTTTTTCTGCCGGCTGACAGAAGATAAGAAATCAGAGAAGTTCTTCAAGGTTTTTTACGATCGAATGAAGGTGGCCCAGCAGGAAATCAAGGCGACAGTGACAGTGAACACCAGCGACTTGGGAAACAAAAAGAAAGATGATGAAGTGGACAGGGATGCCCCGTCTCGGAAGAAAG
Seq A exon
CCAAAGAGCCCACAACACAGATAACAGAAGAGGTCCGGGATCAGCTCCTGGAAGCATCTGCTGCCACCAGGAAAGCCTTTACCACCTTCCGGAGGGAGGCCGACCCTGATGACCATTACCAGTCTGGGGAGGGCACCCAGGCTACAACCGACAAAGCCAAGGATGACCTAGAGATGAGCGCTGTCATCACCATCATGCAGCCTATCCTGCGCTTCCTGCAGCTGCTGTGTGAAAACCACAACCGAGATCTGCAG
Seq C2 exon
AATTTCCTTCGTTGCCAAAATAATAAGACCAACTACAATTTGGTGTGTGAGACACTGCAGTTTCTGGACTGTATTTGTGGGAGCACAACCGGAGGCCTTGGTCTTCTTGGACTGTACATAAATGAAAAGAATGTAGCACTTATCAACCAAACCCTGGAGAGTCTGACGGAGTACTGTCAAGGGCCTTGCCATGAGAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030102-'52-55,'52-54,53-55=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.393 A=0.447 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF084546=RIH_assoc=PU(24.2=34.1)
C2:
PF084546=RIH_assoc=FE(55.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCGAATGAAGGTGGCCCAG
R:
GCAAGGCCCTTGACAGTACTC
Band lengths:
307-561
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: