RnoEX6014525 @ rn6
Exon Skipping
Gene
ENSRNOG00000007104 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor, type 1 [Source:RGD Symbol;Acc:2933]
Coordinates
chr4:140503164-140512245:+
Coord C1 exon
chr4:140503164-140503344
Coord A exon
chr4:140505445-140505698
Coord C2 exon
chr4:140512045-140512245
Length
254 bp
Sequences
Splice sites
3' ss Seq
GTCACGGGTTTGCCTTTTAGCCA
3' ss Score
5.99
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
CACTCATTTTTCTGCCGGCTGACGGAAGATAAGAAATCAGAGAAGTTCTTCAAGGTCTTTTACGATCGAATGAAGGTGGCCCAGCAGGAAATCAAGGCGACAGTGACCGTGAACACCAGCGATTTGGGAAACAAAAAGAAAGATGATGAAGTGGACCGGGATGCCCCATCCCGGAAGAAAG
Seq A exon
CCAAAGAGCCCACAACACAGATAACAGAAGAGGTCCGGGATCAGCTCTTGGAAGCATCTGCTGCCACCAGAAAAGCCTTTACCACCTTCCGGAGGGAGGCCGACCCTGATGACCATTACCAATCTGGGGAGGGCACCCAGGCTACAACGGACAAAGCCAAGGATGACCTAGAGATGAGTGCAGTCATCACCATCATGCAGCCTATCCTGCGCTTCCTGCAGCTCCTGTGTGAAAACCACAACCGCGATCTGCAG
Seq C2 exon
AATTTCCTTCGTTGCCAAAATAATAAGACCAACTACAACTTGGTGTGTGAGACACTGCAGTTTCTGGACTGTATCTGTGGGAGCACAACTGGAGGCCTTGGTCTTCTCGGACTGTACATAAATGAAAAGAATGTAGCTCTTATCAACCAAACCCTGGAGAGTCTGACTGAGTACTGTCAAGGGCCTTGCCATGAAAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007104-'74-77,'74-74,75-77=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.393 A=0.447 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF084546=RIH_assoc=PU(24.2=34.1)
C2:
PF084546=RIH_assoc=FE(55.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCGAATGAAGGTGGCCCAG
R:
GCAAGGCCCTTGACAGTACTC
Band lengths:
307-561
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]