DreEX6092765 @ danRer10
Exon Skipping
Gene
ENSDARG00000074149 | itpr1b
Description
inositol 1,4,5-trisphosphate receptor, type 1b [Source:ZFIN;Acc:ZDB-GENE-070604-2]
Coordinates
chr11:35580342-35583114:-
Coord C1 exon
chr11:35582931-35583114
Coord A exon
chr11:35582428-35582678
Coord C2 exon
chr11:35580342-35580542
Length
251 bp
Sequences
Splice sites
3' ss Seq
TAATCCTCTCTATCTCTCAGTCA
3' ss Score
6.77
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
Exon sequences
Seq C1 exon
CGGTCGTTCTTCTGCCGCTTGACGGGTGATAATAAGTCAGAGAAGTTCTTTAAGGTGTTTTACGAGCGGATGAAACTCGCCCAGCAGGAGATCAAGGCCACAGTGACGGTGAACACCAGCGATCTAGGCAGCAAACGCAAAGATGAGGACACCAATGATAAGGATGTACAATCACGCAAGAAAG
Seq A exon
TCAAAGATGTGGCTGTTATAACCGAAGAAGTGCGAGAGCAGCTACTAGAAGCCTCTACGGTCACTAAGAAGGCCTTCAGCACTTACAGAAGAGAAGCGGACGCGGATGAGCATCTGAATGCTACGGAGGGACCAAGCAGCACAGCTGAGAAGAACCAGGACGAGAACGAGATGAGCGTCATCATCACCATCATGCAGCCAATCCTGCGCCTCATGCAGCTGCTCTGCGAAAACCACAACCGAGAGCTGCAG
Seq C2 exon
AACTTCCTTCGCTGTCAGAACAACAAAAACAACTACAACCTGGTGTGCGAGACGCTGCAGTTCCTAGATTGTATATGCGGCAGCACTACAGGAGGCCTGGGGCTGCTGGGACTCTACATTAATGAGAAGAACGTCGCTCTTATAAACCAGACTGTGGAGAGTCTGACTGAATACTGCCAGGGCCCTTGCCATGAAAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074149-'51-50,'51-48,52-50=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.323 A=0.262 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF084546=RIH_assoc=PU(25.4=36.9)
C2:
PF084546=RIH_assoc=FE(54.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGAAACTCGCCCAGCAGG
R:
GCCCTGGCAGTATTCAGTCAG
Band lengths:
299-550
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]