GgaEX1030865 @ galGal4
Exon Skipping
Gene
ENSGALG00000008294 | ITPR1
Description
inositol 1,4,5-triphosphate receptor, type 1 [Source:RefSeq peptide;Acc:NP_001167530]
Coordinates
chr12:18495092-18500983:+
Coord C1 exon
chr12:18495092-18495272
Coord A exon
chr12:18495907-18496160
Coord C2 exon
chr12:18500783-18500983
Length
254 bp
Sequences
Splice sites
3' ss Seq
TCTGTTCTTGTGTATTGTAGTGA
3' ss Score
8.3
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
CATTCGTTCTTCTGCCGACTAACAGAAGACAAGAAATCCGAAAAGTTCTTTAAGGTTTTTTACGATCGCATGAAAGTAGCACAGCAGGAAATCAAGGCTACTGTCACAGTCAACACGAGTGACTTAGGAAACAAAAAGAAAGATGAAGACTCAGACAGAGACGTTCCCAACAGAAAAAGAG
Seq A exon
TGAGGGAGCCCATGACCCAAATTACAGAGGAAGTCCGGGATCAGTTACTGGAGGCCTCTGCAGCTACAAGAAAGGCGTACAGCACCTACCGGAGGGAAGCTGATTCTGATGACCATTATTCAGCGGCAGAAGGCGCACAGTCAGCAGCAGACAAGAGCAAAGATGACCTGGAGATGAGTGCTGTGATCTCCATAATGCAACCCATCCTCCGCTTCTTGCAGCTGCTCTGTGAAAACCACAACCGGGATTTGCAG
Seq C2 exon
AATTTCCTTCGCTGCCAGAACAACAAGACCAACTACAACTTGGTGTGTGAAACGCTGCAGTTCCTGGACTGCATCTGTGGAAGCACAACTGGTGGGCTTGGACTTCTTGGTCTGTATATCAATGAGAAAAACGTAGCGCTGATCAACCAGACGCTGGAAAGCTTGACTGAGTACTGCCAGGGGCCCTGCCACGAAAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008294_MULTIEX3-24/24=22-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.410 A=0.247 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF084546=RIH_assoc=PU(24.2=34.1)
C2:
PF084546=RIH_assoc=FE(55.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGCATGAAAGTAGCACAGCA
R:
CCTGGCAGTACTCAGTCAAGC
Band lengths:
297-551
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]