MmuEX6006002 @ mm9
Exon Skipping
Gene
ENSMUSG00000030102 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor 1 [Source:MGI Symbol;Acc:MGI:96623]
Coordinates
chr6:108360803-108366952:+
Coord C1 exon
chr6:108360803-108360923
Coord A exon
chr6:108363763-108363947
Coord C2 exon
chr6:108366804-108366952
Length
185 bp
Sequences
Splice sites
3' ss Seq
GTCATCCGTCTCTTTTGCAGCCA
3' ss Score
9.82
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
ACCCGCCAGCCTGTCTTTGTGCAACTCCTGCAAGGCGTGTTCCGAGTTTACCACTGCAACTGGCTGATGCCGAGCCAAAAAGCCTCGGTGGAGAGCTGCATCCGGGTGCTCTCTGACGTAG
Seq A exon
CCAAGAGCCGGGCCATAGCCATTCCTGTTGACCTGGACAGCCAAGTCAACAACCTCTTCCTGAAGTCCCACAACATTGTGCAGAAAACAGCCCTGAACTGGCGGTTATCAGCCCGAAACGCCGCTCGCAGAGACTCTGTACTGGCAGCATCCAGAGACTACCGAAATATCATTGAGAGGTTACAG
Seq C2 exon
GACATCGTGTCTGCCCTAGAGGACCGGCTCAGGCCCCTGGTGCAGGCTGAGCTGTCTGTGCTCGTGGATGTTCTACACAGACCAGAACTGCTCTTCCCCGAGAACACGGATGCCAGGAGGAAATGTGAGAGTGGAGGTTTCATCTGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030102-'42-43,'42-41,43-43=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.020
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCCTGTCTTTGTGCAACT
R:
CACATTTCCTCCTGGCATCCG
Band lengths:
243-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: