GgaEX1030862 @ galGal4
Exon Skipping
Gene
ENSGALG00000008294 | ITPR1
Description
inositol 1,4,5-triphosphate receptor, type 1 [Source:RefSeq peptide;Acc:NP_001167530]
Coordinates
chr12:18460136-18496160:+
Coord C1 exon
chr12:18460136-18460256
Coord A exon
chr12:18460879-18461063
Coord C2 exon
chr12:18495907-18496160
Length
185 bp
Sequences
Splice sites
3' ss Seq
TAAACCTCTACTTGTTGCAGCAA
3' ss Score
5.51
5' ss Seq
CAGGTGACT
5' ss Score
6.6
Exon sequences
Seq C1 exon
ACTCGCCAGCCTGTGTTTGTTCAGTTGCTGCAAGGTGTGTTCAGAGTTTACCATTGCAACTGGTTAATGCCAAGCCAAAAGGCATCAGTGGAAAGCTGCATTCGGGTGCTCTCAGATGTAG
Seq A exon
CAAAAAGCCGAGCAATTGCAATTCCTGTGGACTTGGACAGTCAGGTCAACAACCTCTTCCTGAAATCTCACAATATTGTGCAGAAGACTGCGATGAACTGGAGAATGACTGCAAGGAATGCTGCCCGCAGGGATTCGGTGCTTGCTGCCTCCAGGGATTATCGAAACATAATTGAAAGATTACAG
Seq C2 exon
TGAGGGAGCCCATGACCCAAATTACAGAGGAAGTCCGGGATCAGTTACTGGAGGCCTCTGCAGCTACAAGAAAGGCGTACAGCACCTACCGGAGGGAAGCTGATTCTGATGACCATTATTCAGCGGCAGAAGGCGCACAGTCAGCAGCAGACAAGAGCAAAGATGACCTGGAGATGAGTGCTGTGATCTCCATAATGCAACCCATCCTCCGCTTCTTGCAGCTGCTCTGTGAAAACCACAACCGGGATTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008294_MULTIEX3-14/24=13-24
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.247
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF084546=RIH_assoc=PU(24.2=34.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGCAAGGTGTGTTCAGAG
R:
TTGCTCTTGTCTGCTGCTGAC
Band lengths:
256-441
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]