RnoEX0045395 @ rn6
Exon Skipping
Gene
ENSRNOG00000007104 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor, type 1 [Source:RGD Symbol;Acc:2933]
Coordinates
chr4:140443976-140449547:+
Coord C1 exon
chr4:140443976-140444096
Coord A exon
chr4:140446367-140446551
Coord C2 exon
chr4:140449399-140449547
Length
185 bp
Sequences
Splice sites
3' ss Seq
GTCATCGGTCTCTTTTGCAGCCA
3' ss Score
9.65
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
ACTCGCCAGCCTGTCTTTGTGCAGCTCCTGCAAGGCGTGTTCCGAGTTTACCACTGCAACTGGTTGATGCCGAGCCAGAAAGCCTCGGTGGAGAGCTGTATCCGCGTGCTCTCTGACGTAG
Seq A exon
CCAAGAGCCGGGCCATAGCCATTCCTGTTGACCTAGACAGCCAAGTCAACAACCTCTTCCTGAAGTCCCACAACATTGTGCAGAAAACAGCCATGAACTGGCGGTTATCAGCCCGCAACGCTGCTCGTAGAGACTCTGTCCTGGCAGCTTCCAGAGACTACCGAAATATTATTGAGAGGTTACAG
Seq C2 exon
GACATCGTGTCTGCCCTGGAGGACCGACTCAGGCCCCTGGTCCAGGCCGAGCTGTCTGTGCTCGTGGATGTTCTACACAGACCGGAACTGCTTTTCCCTGAGAACACGGATGCCAGGAGGAAATGCGAAAGTGGAGGTTTCATCTGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007104-'54-55,'54-53,56-55
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.027
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGTCTTTGTGCAGCTCCTG
R:
CTTTCGCATTTCCTCCTGGCA
Band lengths:
243-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]