BtaEX6093959 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020455 | ITPR1
Description
Bos taurus inositol 1,4,5-trisphosphate receptor, type 1 (ITPR1), mRNA. [Source:RefSeq mRNA;Acc:NM_174841]
Coordinates
chr22:21746630-21753133:-
Coord C1 exon
chr22:21753013-21753133
Coord A exon
chr22:21750604-21750788
Coord C2 exon
chr22:21746630-21746778
Length
185 bp
Sequences
Splice sites
3' ss Seq
GCCCCATCTCTCCTGTGCAGCCA
3' ss Score
8.94
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
ACTCGCCAGCCCGTCTTTGTGCAGCTTCTGCAAGGTGTGTTCCGGGTTTACCACTGCAACTGGCTCATGCCAAGCCAGAAGGCCTCGGTGGAGAGCTGCATCCGGGTGCTCTCTGATGTAG
Seq A exon
CCAAGAGCCGGGCCATTGCCATTCCCGTGGACTTGGACAGTCAGGTCAACAACCTCTTCCTCAAGTCCCACAACCTCGTGCAGAAAACCGCCATGAACTGGCGGCTGACGGCCCGCAATGCTGCCCGCAGAGACTCTGTCCTGGCCGCTTCCAGGGACTACCGGAACATCATCGAGAGACTGCAG
Seq C2 exon
GACATCGTCTCGGCCCTGGAGGACCGTCTCCGGCCCCTGGTGCAGGCCGAGTTATCTGTGCTGGTGGATGTCCTCCACCGGCCCGAGCTGCTCTTCCCGGAGAACACGGACGCCAGGAGGAAGTGTGAAAGCGGGGGCTTCATCTGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020455-'38-38,'38-36,39-38=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.092
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGTCTTTGTGCAGCTTCTG
R:
CTTTCACACTTCCTCCTGGCG
Band lengths:
243-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]