MmuEX6006020 @ mm9
Exon Skipping
Gene
ENSMUSG00000030102 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor 1 [Source:MGI Symbol;Acc:MGI:96623]
Coordinates
chr6:108328156-108331354:+
Coord C1 exon
chr6:108328156-108328297
Coord A exon
chr6:108330910-108331068
Coord C2 exon
chr6:108331182-108331354
Length
159 bp
Sequences
Splice sites
3' ss Seq
GCTCTTTCTTTCACAAACAGATC
3' ss Score
9.18
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
Exon sequences
Seq C1 exon
GTCTGTCACGAAGCTTTTGGAAGACTTGGTTTACTTTGTCACGGGTGGAACTAACTCTGGCCAAGACGTGCTTGAAGTTGTCTTCTCTAAGCCCAATCGAGAGCGGCAGAAGCTGATGAGGGAACAGAATATTCTCAAGCAG
Seq A exon
ATCTTCAAGCTGTTGCAGGCCCCCTTCACGGACTGCGGGGATGGCCCGATGCTTCGGCTGGAGGAGCTGGGGGATCAGCGCCATGCTCCTTTCAGACATATTTGCCGACTCTGCTACAGGGTCCTGCGACACTCACAGCAAGACTACAGGAAGAACCAG
Seq C2 exon
GAGTACATAGCCAAGCAGTTTGGCTTCATGCAGAAGCAGATTGGCTATGACGTGCTGGCCGAAGACACCATCACTGCCCTGCTCCACAACAACCGGAAACTCCTGGAGAAGCACATCACCGCGGCAGAGATTGACACGTTTGTCAGCCTGGTGCGAAAGAACAGGGAGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030102-'19-19,'19-18,20-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0136516=RYDR_ITPR=PU(22.3=95.8)
A:
PF0136516=RYDR_ITPR=FE(25.2=100)
C2:
PF0136516=RYDR_ITPR=FE(27.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAACTCTGGCCAAGACGTGC
R:
CTTTCGCACCAGGCTGACAAA
Band lengths:
251-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: