RnoEX0045386 @ rn6
Exon Skipping
Gene
ENSRNOG00000007104 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor, type 1 [Source:RGD Symbol;Acc:2933]
Coordinates
chr4:140411396-140414602:+
Coord C1 exon
chr4:140411396-140411537
Coord A exon
chr4:140413507-140413665
Coord C2 exon
chr4:140414430-140414602
Length
159 bp
Sequences
Splice sites
3' ss Seq
CTCTTTCTTTTTACAAACAGATC
3' ss Score
9.79
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
Exon sequences
Seq C1 exon
GTCTGTCACCAAGCTGCTGGAAGACTTGGTTTACTTTGTCACGGGTGGAACGAACTCTGGCCAAGACGTGCTTGAAGTAGTCTTCTCTAAGCCCAACCGAGAGCGGCAGAAGCTGATGAGGGAACAGAATATTCTCAAGCAG
Seq A exon
ATCTTCAAGCTTTTGCAGGCCCCCTTCACGGACTGCGGGGATGGCCCAATGCTTCGGCTGGAGGAGCTGGGGGACCAGCGGCACGCTCCTTTCAGACACATTTGCCGACTCTGCTACAGGGTCCTGAGACACTCACAGCAAGACTACAGGAAGAACCAG
Seq C2 exon
GAGTACATAGCCAAGCAGTTTGGCTTCATGCAGAAGCAGATTGGCTATGATGTGCTGGCCGAAGACACCATCACTGCCCTGCTCCACAACAACCGAAAGCTCCTGGAAAAGCACATCACCGCAGCAGAGATTGACACGTTTGTCAGCCTGGTGCGAAAGAACAGGGAGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007104-'30-27,'30-26,32-27
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=0.002 C2=0.000
Domain overlap (PFAM):
C1:
PF0136516=RYDR_ITPR=PU(22.3=95.8)
A:
PF0136516=RYDR_ITPR=FE(25.2=100)
C2:
PF0136516=RYDR_ITPR=FE(27.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTGTCACGGGTGGAACGAA
R:
CAATCTCTGCTGCGGTGATGT
Band lengths:
242-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]