GgaEX1030852 @ galGal4
Exon Skipping
Gene
ENSGALG00000008294 | ITPR1
Description
inositol 1,4,5-triphosphate receptor, type 1 [Source:RefSeq peptide;Acc:NP_001167530]
Coordinates
chr12:18437308-18438655:+
Coord C1 exon
chr12:18437308-18437449
Coord A exon
chr12:18437798-18437956
Coord C2 exon
chr12:18438483-18438655
Length
159 bp
Sequences
Splice sites
3' ss Seq
GGGTTTTAATAAATCCATAGATT
3' ss Score
5.14
5' ss Seq
CAGGTTTGG
5' ss Score
5.63
Exon sequences
Seq C1 exon
ATCTGTTACCAAATTGTTGGAGGATTTGGTCTACTTTGTTACTGGTGGAACTAATTCTGGGCAAGACGTCCTTGAAGTGGTATTTTCTAAACCTAATAGAGAACGGCAAAAACTGATGAGAGAACAGAATATTCTAAAGCAG
Seq A exon
ATTTTCAAGTTGTTGCAAGCACCATTTACAGACAGCGGCGATGGCCCCATGCTGCGGTTGGAGGAGCTCGGAGACCAACGTCACGCTCCATTCAGACACATATGCCGGCTCTGCTACAGGGTGCTGAGGCATTCTCAGCAGGATTACAGGAAGAATCAG
Seq C2 exon
GAATACATTGCAAAGCAATTTGGCTTCATGCAGAAACAAATTGGCTATGATGTCTTGGCTGAGGACACTATTACAGCACTGCTTCACAACAATCGCAAGCTCCTGGAGAAACACATCACGGCTGCTGAGATTGATACCTTTGTTAGTCTTGTGAGGAAGAATAGGGAGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008294-'19-25,'19-24,20-25
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.083 A=0.038 C2=0.000
Domain overlap (PFAM):
C1:
PF0136516=RYDR_ITPR=PU(22.3=95.8)
A:
PF0136516=RYDR_ITPR=FE(25.2=100)
C2:
PF0136516=RYDR_ITPR=FE(27.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGGTGGAACTAATTCTGGGC
R:
AAGGTATCAATCTCAGCAGCCG
Band lengths:
242-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]