DreEX6092744 @ danRer10
Exon Skipping
Gene
ENSDARG00000074149 | itpr1b
Description
inositol 1,4,5-trisphosphate receptor, type 1b [Source:ZFIN;Acc:ZDB-GENE-070604-2]
Coordinates
chr11:35678356-35682713:-
Coord C1 exon
chr11:35682572-35682713
Coord A exon
chr11:35681259-35681417
Coord C2 exon
chr11:35678356-35678528
Length
159 bp
Sequences
Splice sites
3' ss Seq
CACTCTCTCTTTTTCACCAGATC
3' ss Score
10.65
5' ss Seq
CAGGTGCGT
5' ss Score
9.73
Exon sequences
Seq C1 exon
GTTTGTCACTAAGCTGCTGGAGGATCTCGTGTTTTTTGTAGTGGACATTCCCAACAATGGACAGGATGTGTTGGAGATCATGGTCAATAAACCCAATCGTGAACGACAGAAACTCATGAGAGAGCAGAACATCCTAAAACAA
Seq A exon
ATCTTCAAGCTGCTACAGGCTCCATTCACAGACAGCGGGGACGGTCCGATGCTGCGTCTGGAGGAGCTGAATGACCAGAGACACGCTCCCTTCAGGCACATCTGCCGGCTCTGCTACCGCGTCCTGCGACACTCACAGCAGGACTACAGGAAGAACCAG
Seq C2 exon
GAATACATTGCCAAGCAGTTCCGCTTCATGCAGAAACAGATCGGCTACGATGTGTTGGCCGAGGACACAATAACAGCCCTCCTCCACAACAACCGCAAACTCTTGGAGAAGCACATCACGGCGGCAGAAATCGACACGTTTGTCAGCCTTGTGAGGAAAAACCGTGAACCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074149-'18-17,'18-16,19-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.083 A=0.038 C2=0.000
Domain overlap (PFAM):
C1:
PF0136516=RYDR_ITPR=PU(22.3=95.8)
A:
PF0136516=RYDR_ITPR=FE(25.2=100)
C2:
PF0136516=RYDR_ITPR=FE(27.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCACTAAGCTGCTGGAGGA
R:
TGCTTCTCCAAGAGTTTGCGG
Band lengths:
252-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]