MmuEX6006026 @ mm9
Exon Skipping
Gene
ENSMUSG00000030102 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor 1 [Source:MGI Symbol;Acc:MGI:96623]
Coordinates
chr6:108306194-108313699:+
Coord C1 exon
chr6:108306194-108306277
Coord A exon
chr6:108306385-108306531
Coord C2 exon
chr6:108313604-108313699
Length
147 bp
Sequences
Splice sites
3' ss Seq
CATCTTGTGTTCACGTACAGGGT
3' ss Score
7.33
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
GTCAACTCCGTCAACTGTAATACAAGCTGGAAGATAGTGCTTTTCATGAAATGGAGTGATAACAAAGACGATATTCTCAAAGGA
Seq A exon
GGTGATGTGGTGAGGCTCTTCCATGCCGAGCAAGAGAAGTTTCTCACCTGCGATGAGCACCGGAAGAAGCAGCATGTGTTCCTGAGGACCACCGGCAGGCAGTCAGCCACATCGGCCACCAGTTCCAAAGCCCTGTGGGAAGTGGAG
Seq C2 exon
GTAGTCCAGCACGACCCATGTCGGGGTGGAGCTGGGTACTGGAATAGCCTCTTCCGGTTCAAGCACCTGGCTACAGGGCATTACTTGGCTGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030102-'12-12,'12-11,13-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.043 C2=0.000
Domain overlap (PFAM):
C1:
PF087096=Ins145_P3_rec=PD(11.2=71.4),PF0281514=MIR=PU(2.0=14.3)
A:
PF0281514=MIR=FE(23.8=100)
C2:
PF0281514=MIR=FE(15.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACTCCGTCAACTGTAATACAAGC
R:
CTCTGCAGCCAAGTAATGCCC
Band lengths:
178-325
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: