BtaEX6093936 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020455 | ITPR1
Description
Bos taurus inositol 1,4,5-trisphosphate receptor, type 1 (ITPR1), mRNA. [Source:RefSeq mRNA;Acc:NM_174841]
Coordinates
chr22:21816473-21821663:-
Coord C1 exon
chr22:21821580-21821663
Coord A exon
chr22:21821336-21821482
Coord C2 exon
chr22:21816473-21816568
Length
147 bp
Sequences
Splice sites
3' ss Seq
CTCTGTGTGTCGACTTGCAGGGT
3' ss Score
9.76
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
GTCAATTCCGTCAACTGCAATACAAGCTGGAAAATAGTCCTTTTCATGAAATGGAGTGACAACAAAGATGACATATTAAAGGGG
Seq A exon
GGTGACGTGGTGAGGCTGTTCCATGCCGAGCAGGAGAAGTTTCTCACCTGTGACGAGCACAGGAAGAAGCAGCACGTCTTTCTGAGAACCACCGGCCGGCAGTCTGCCACGTCCGCCACCAGCTCAAAAGCCCTGTGGGAGGTGGAG
Seq C2 exon
GTGGTCCAACATGACCCATGTCGGGGAGGAGCAGGGTACTGGAACAGCCTCTTCCGTTTCAAGCATCTTGCTACCGGGCATTACTTAGCAGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020455-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.041 C2=0.000
Domain overlap (PFAM):
C1:
PF087096=Ins145_P3_rec=PD(11.4=71.4),PF0281514=MIR=PU(2.0=14.3)
A:
PF0281514=MIR=FE(23.8=100)
C2:
PF0281514=MIR=FE(15.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAATTCCGTCAACTGCAAT
R:
CTGCTGCTAAGTAATGCCCGG
Band lengths:
178-325
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]