GgaEX1030850 @ galGal4
Exon Skipping
Gene
ENSGALG00000008294 | ITPR1
Description
inositol 1,4,5-triphosphate receptor, type 1 [Source:RefSeq peptide;Acc:NP_001167530]
Coordinates
chr12:18429873-18431676:+
Coord C1 exon
chr12:18429873-18429956
Coord A exon
chr12:18430046-18430192
Coord C2 exon
chr12:18431581-18431676
Length
147 bp
Sequences
Splice sites
3' ss Seq
TGTGTTCTGGGCTTTGACAGGGG
3' ss Score
7.15
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
GTCAACTCTGTGAATTGCAATACAAGCTGGAAAATAGTCCTTTTCATGAAATGGAGCGATAATAAAGATGACATCCTCAAAGGG
Seq A exon
GGGGATGTAGTAAGATTGTTTCATGCAGAGCAGGAGAAGTTTCTGACTTGTGATGAGCACAGGAAAAAGCAGCACGTCTTCCTGAGAACGACGGGGAGGCAGTCTGCCACTTCTGCAACCAGCTCAAAAGCACTGTGGGAGGTAGAG
Seq C2 exon
GTGGTACAGCATGATCCTTGTCGTGGCGGTGCAGGGTACTGGAACAGTCTGTTCAGGTTCAAACACCTTGCTACTGGACACTACTTAGCGGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008294-'11-16,'11-15,12-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.143 C2=0.000
Domain overlap (PFAM):
C1:
PF087096=Ins145_P3_rec=PD(8.8=71.4),PF0281514=MIR=PU(2.0=14.3)
A:
PF0281514=MIR=FE(23.8=100)
C2:
PF0281514=MIR=FE(15.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAACTCTGTGAATTGCAATACAAGC
R:
TCTGCCGCTAAGTAGTGTCCA
Band lengths:
178-325
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]