RnoEX6014544 @ rn6
Exon Skipping
Gene
ENSRNOG00000007104 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor, type 1 [Source:RGD Symbol;Acc:2933]
Coordinates
chr4:140379182-140396777:+
Coord C1 exon
chr4:140379182-140379265
Coord A exon
chr4:140379368-140379514
Coord C2 exon
chr4:140396682-140396777
Length
147 bp
Sequences
Splice sites
3' ss Seq
CATCTCGCGTGGACGTACAGGGT
3' ss Score
1.66
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
GTCAACTCCGTCAACTGTAACACAAGCTGGAAAATAGTGCTTTTCATGAAATGGAGTGATAACAAAGATGACATTCTAAAAGGA
Seq A exon
GGTGATGTGGTAAGACTCTTCCATGCTGAGCAAGAGAAGTTTCTCACGTGCGATGAGCACAGGAAGAAGCAGCACGTCTTCCTGAGGACAACCGGCAGACAGTCAGCCACGTCGGCCACCAGCTCCAAAGCCCTGTGGGAAGTGGAG
Seq C2 exon
GTAGTCCAGCATGACCCATGTCGGGGTGGAGCTGGGTACTGGAATAGCCTCTTCCGGTTCAAGCACCTGGCTACAGGGCATTACTTGGCAGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007104-'23-17,'23-15,24-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.045 C2=0.000
Domain overlap (PFAM):
C1:
PF087096=Ins145_P3_rec=PD(37.0=71.4),PF0281514=MIR=PU(2.0=14.3)
A:
PF0281514=MIR=FE(23.8=100)
C2:
PF0281514=MIR=FE(15.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAACTCCGTCAACTGTAACACA
R:
CTCTGCTGCCAAGTAATGCCC
Band lengths:
179-326
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]