MmuEX6006543 @ mm9
Exon Skipping
Gene
ENSMUSG00000041460 | Cacna2d4
Description
calcium channel, voltage-dependent, alpha 2/delta subunit 4 [Source:MGI Symbol;Acc:MGI:2442632]
Coordinates
chr6:119293548-119294598:+
Coord C1 exon
chr6:119293548-119293618
Coord A exon
chr6:119293985-119294060
Coord C2 exon
chr6:119294546-119294598
Length
76 bp
Sequences
Splice sites
3' ss Seq
AGTTTGTTTCTGCATTTCAGTGT
3' ss Score
7.32
5' ss Seq
AGTGTGAGT
5' ss Score
6.96
Exon sequences
Seq C1 exon
ATGGGAAGACTTCTGGGGGAAGCGGATGGTGCTCTCATGAAGCAACTTCTCAGCATGGGGGTGTTCAGCCG
Seq A exon
TGTGACCATGTATGACTACCAGGCCATGTGCAAGCCCCCAGATCATCACCACAGTGCGGCCGAATCCCTGTTCAGT
Seq C2 exon
CCTCTCTCTGCCTTCTTGATGGTGGCCAGGTGGCTACTGCATGAATGTCTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041460-'29-30,'29-29,30-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGGAAGACTTCTGGGGGAA
R:
ACATTCATGCAGTAGCCACCTG
Band lengths:
119-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: