RnoEX0016151 @ rn6
Exon Skipping
Gene
ENSRNOG00000008031 | Cacna2d4
Description
calcium voltage-gated channel auxiliary subunit alpha2delta 4 [Source:RGD Symbol;Acc:1562038]
Coordinates
chr4:151403128-151404110:+
Coord C1 exon
chr4:151403128-151403228
Coord A exon
chr4:151403498-151403573
Coord C2 exon
chr4:151404058-151404110
Length
76 bp
Sequences
Splice sites
3' ss Seq
AGCCTGCTTTTGCATTTCAGTGT
3' ss Score
7.55
5' ss Seq
AGTGTGAGT
5' ss Score
6.96
Exon sequences
Seq C1 exon
ACTCTAGTAGTTCTAGCCCCCCCCCCCACAGATTGGAAGACTTCTGGGGGAAGCGGATGGTGCTCTCATGACGCAGCTTCTCAGCATGGGGGTTTCAGCCG
Seq A exon
TGTGACCATGTATGACTACCAAGCCATGTGCAAGCCCCCGGATCACCACCACAGTGCAGCCGAATCCCTGATCAGT
Seq C2 exon
CCTCTCTCTGCCTTCCTGACGGTGGCCAAGTGGCTACTACATGAATGTCTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008031-'43-49,'43-48,44-49
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCTAGTAGTTCTAGCCCCC
R:
GCAGACATTCATGTAGTAGCCACT
Band lengths:
153-229
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]