GgaEX6002702 @ galGal4
Exon Skipping
Gene
ENSGALG00000013007 | CACNA2D4
Description
calcium channel, voltage-dependent, alpha 2/delta subunit 4 [Source:HGNC Symbol;Acc:HGNC:20202]
Coordinates
chr1:61125314-61128143:-
Coord C1 exon
chr1:61128073-61128143
Coord A exon
chr1:61127138-61127213
Coord C2 exon
chr1:61125314-61125366
Length
76 bp
Sequences
Splice sites
3' ss Seq
TTGCTTTGTTTTAATTGCAGGGT
3' ss Score
8.74
5' ss Seq
AGTGTACGT
5' ss Score
5.37
Exon sequences
Seq C1 exon
ATTGGAAAATTTCTTGGTGTGGTGGATGGCTCAGTAATGACCCAGCTACTGAACATGGGCATGTTCAGGCG
Seq A exon
GGTGACAATGTATGACTACCAAGCAATGTGCAAGGTGCCCTACCACCACCACAGTGGTGCCCGGCCGCTGCTCAGT
Seq C2 exon
CCAATTTATGCCTTTCTAGCTGCACTGAAATGGCTGATAAGTGATTTCCTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013007-'34-38,'34-37,35-38=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAAATTTCTTGGTGTGGTGGA
R:
TGAGGAAATCACTTATCAGCCA
Band lengths:
121-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]