MmuEX6006560 @ mm9
Exon Skipping
Gene
ENSMUSG00000041460 | Cacna2d4
Description
calcium channel, voltage-dependent, alpha 2/delta subunit 4 [Source:MGI Symbol;Acc:MGI:2442632]
Coordinates
chr6:119221427-119224376:+
Coord C1 exon
chr6:119221427-119221540
Coord A exon
chr6:119221891-119221969
Coord C2 exon
chr6:119224243-119224376
Length
79 bp
Sequences
Splice sites
3' ss Seq
GACCTGTCTCTTATGGACAGGTC
3' ss Score
8.44
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
TTCCAAGAGTCCAAACAAGGAAGTCTCTGCAACCAGGCCATCATGCTTATCACCGATGGGGCTGTGGAAGACTATGAGCCCGTGTTTGAGACCTATAACTGGCCAGACCGAAAG
Seq A exon
GTCCGAGTTTTCACTTACCTTATTGGAAGAGAAGTGACTTTCGCTGACCGCATGAAGTGGATCGCCTGCAACAATAAAG
Seq C2 exon
GCTACTACACACAGATCTCCACACTGGCGGATGCGCAGGAGAGCGTGATGGAGTACCTGCATGTGCTTAGCCGCCCCATGGTCATCAACCATGACCACGACATCATCTGGACAGAGGCTTACATGGACAGCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041460-'10-11,'10-10,11-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF137681=VWA_3=FE(22.3=100)
A:
PF137681=VWA_3=FE(15.7=100)
C2:
PF137681=VWA_3=PD(2.4=8.9),PF0274313=Cache_1=PU(12.1=17.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGCCCGTGTTTGAGACCTA
R:
GGCTGTCCATGTAAGCCTCTG
Band lengths:
172-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: