BtaEX6024834 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021994 | CACNA2D4
Description
calcium channel, voltage-dependent, alpha 2/delta subunit 4 [Source:HGNC Symbol;Acc:HGNC:20202]
Coordinates
chr5:108783069-108785291:-
Coord C1 exon
chr5:108785178-108785291
Coord A exon
chr5:108784750-108784828
Coord C2 exon
chr5:108783069-108783202
Length
79 bp
Sequences
Splice sites
3' ss Seq
TACCGGGTCTCATCCACCAGGTC
3' ss Score
7.82
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
TTCCAAGAGGCCGGGCAAGGAAGCCTGTGCAACCAGGCCATCATGCTGATCACCGATGGTGCTGTGGAAGACTATGAGCCGGTGCTGGAGAAGTACAACTGGCCAGACCGCAAG
Seq A exon
GTCCGGGTCTTCACCTACCTGATTGGGAGGGAAGTGAGTTTTGCTGACCGCTTGAAGTGGATCGCCTGCAACAACAAAG
Seq C2 exon
GCTACTACACGCAGATCTCCACACTGGCGGATGCCCAGGAGAACGTGATGGAATACCTGCATGTGCTCAGCCGGCCCATGGTCATCAACCACGACCACGACATCACCTGGACCGAAGCCTACATAGATAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021994-'10-11,'10-10,11-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF137681=VWA_3=FE(22.3=100)
A:
PF137681=VWA_3=FE(15.7=100)
C2:
PF137681=VWA_3=PD(2.4=8.9),PF0274313=Cache_1=PU(8.5=17.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCATCATGCTGATCACCGAT
R:
ATGTCGTGGTCGTGGTTGATG
Band lengths:
181-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]