GgaEX6002685 @ galGal3
Exon Skipping
Gene
ENSGALG00000013007 | CACNA2D4
Description
NA
Coordinates
chr1:63193026-63196184:-
Coord C1 exon
chr1:63196071-63196184
Coord A exon
chr1:63195176-63195254
Coord C2 exon
chr1:63193026-63193159
Length
79 bp
Sequences
Splice sites
3' ss Seq
CTTTTCTTTCTTGTTCCCAGGTC
3' ss Score
11.88
5' ss Seq
AAGGTACTG
5' ss Score
8.56
Exon sequences
Seq C1 exon
TTCAGAGACGCTGGCCAAGGGGGCTTGTGTAACCAAGCCATCATGCTGATCACAGACGGAGCAGTGGAGGATTATGAAGCTGTGTTTGAAAAGTACAACTGGCCAGATCGGAAG
Seq A exon
GTCCGGGTTTTCACTTACCTCATTGGACGGGAGGTCACTTTTGCCCCCAACGTGAAATGGATCGCTTGCAACAACAAAG
Seq C2 exon
GCTACTATACCCAGATCTCCACACTGGCGGACGTCCAGGAGAACGTGATGGAGTACCTGCATGTTCTCAGCCGTCCTATGGTCATCAACCATGACCACGACATTATATGGACTGAAGCCTACATGGACAGTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013007-'9-10,'9-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF137681=VWA_3=FE(22.3=100)
A:
PF137681=VWA_3=FE(15.7=100)
C2:
PF137681=VWA_3=PD(2.4=8.9),PF0274313=Cache_1=PU(8.0=17.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGGGGGCTTGTGTAACCAA
R:
ACCATAGGACGGCTGAGAACA
Band lengths:
181-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]