MmuEX6006848 @ mm10
Exon Skipping
Gene
ENSMUSG00000008845 | Cd163
Description
CD163 antigen [Source:MGI Symbol;Acc:MGI:2135946]
Coordinates
chr6:124320355-124326145:+
Coord C1 exon
chr6:124320355-124320678
Coord A exon
chr6:124325261-124325572
Coord C2 exon
chr6:124326116-124326145
Length
312 bp
Sequences
Splice sites
3' ss Seq
GTTTGTTTGTTTGTTTTCAGACA
3' ss Score
9.17
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
AGTTCATGTCTCTGAGGCTGACCAACGAAGCCCACAAAGAAAACTGCACAGGTCGCCTTGAAGTGTTTTACAATGGTACATGGGGCAGTATTGGCAGTAGCAATATGTCTCCAACCACTGTGGGGGTGGTGTGCCGTCAGCTGGGCTGTGCAGACAACGGGACTGTGAAACCCATACCTTCAGACAAGACACCATCCAGGCCCATGTGGGTAGATCGTGTGCAGTGTCCAAAAGGAGTTGACACTTTGTGGCAGTGCCCCTCGTCACCTTGGAAACAGAGACAGGCCAGCCCCTCCTCCCAGGAGTCCTGGATCATCTGTGACA
Seq A exon
ACAAAATAAGACTCCAGGAAGGGCATACAGACTGTTCTGGACGTGTGGAGATCTGGCACAAAGGTTCCTGGGGAACAGTGTGTGATGACTCCTGGGATCTTAATGATGCTAAGGTTGTATGTAAGCAGTTGGGCTGTGGCCAAGCTGTGAAGGCACTAAAAGAAGCAGCATTTGGTCCAGGAACTGGGCCCATATGGCTCAATGAAATTAAGTGTAGAGGGAATGAGTCTTCCCTGTGGGATTGTCCTGCCAAACCGTGGAGTCACAGCGACTGTGGGCACAAAGAAGATGCTTCCATCCAGTGCCTCCCAA
Seq C2 exon
AAATGACTTCAGAATCACATCATGGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000008845-'11-18,'11-14,12-18=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.092 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=89.9)
A:
PF0053013=SRCR=WD(100=93.3)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCTGAGGCTGACCAACGAA
R:
TGTGCCATGATGTGATTCTGAAGT
Band lengths:
345-657
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types