BtaEX6024200 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019669 | CD163
Description
Bos taurus CD163 molecule (CD163), mRNA. [Source:RefSeq mRNA;Acc:NM_001163413]
Coordinates
chr5:102274297-102276225:+
Coord C1 exon
chr5:102274297-102274617
Coord A exon
chr5:102275392-102275700
Coord C2 exon
chr5:102276190-102276225
Length
309 bp
Sequences
Splice sites
3' ss Seq
AGATGTCTCTGATTTTTCAGATA
3' ss Score
8.26
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
AGTTCATGTCTCTCAGACTCATCAGTGACAGCAGCAGCGAGACCTGTGCAGGGCGCCTGGAAGTTTTTTACAACGGAGCTTGGGGCAGCGTGGGCAAGAGCGACATGTCTGCAACCACGGTGGGGGTGGTATGCAGGCAGCTCGGCTGTACTGACAAAGGGAGTATCAGACCAGCACCTTCAGACAAGGTGGAGAACAGGTACATGTGGGTGGACAATGTCCGGTGTCCTAAGGGACCTGAAACCTTATGGCAGTGCCCATCATCTCCGTGGAAGAGGAGACTGGCCAGCCCCTCAGAGGAGACCTGGATCACATGTGCTG
Seq A exon
ATAAAATAAGGCTTCAGGAAGGAACCACTAATTGTTCTGGACGCGTGGAGGTCTGGCACGGAGGTTCCTGGGGCACAGTGTGTGATGACTCCTGGGACCTTAACGATGCCCAGGTGGTGTGTCGCCAGCTGGGCTGTGGCTTAGCTCTGGAGGCAGGAAAAGAGGCAGCGTTCGGCCAGGGAACTGGGCCCATATGGCTCAATGAAGTGAAGTGCAAGGGCAATGAGTCCTCCTTGTGGGATTGTCCTGCCAGATCCTGGGGACACAGTGACTGCGGGCACAAGGAGGATGCCTCTGTGAAGTGCTCAG
Seq C2 exon
AAATTGCAGAGAGCAAAGGATCAGTAAAGGCCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019669-'14-19,'14-18,15-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=90.7)
A:
PF0053013=SRCR=WD(100=94.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTCATCAGTGACAGCAGCA
R:
CTGCGGCCTTTACTGATCCTT
Band lengths:
342-651
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]